PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g19800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 240aa    MW: 27438.8 Da    PI: 5.6109
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g19800genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-052954123
                EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                + Cp   Cgk++ + + Lk+Hi++ H
  CA03g19800 29 HICPypECGKRYAHEYKLKNHISStH 54
                679999****************9988 PP

2zf-C2H216.91.7e-0591116123
                 EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                 y+Cp   C+ks+ + + L+ H+r+ H
  CA03g19800  91 YSCPyeGCDKSYIHEYKLNLHLRNmH 116
                 99*********************989 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.07E-10959No hitNo description
Gene3DG3DSA:3.30.160.601.2E-101555IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8452959IPR007087Zinc finger, C2H2
SMARTSM003550.0312954IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803154IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-985113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.07E-686121No hitNo description
SMARTSM003558.2E-491116IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.34491121IPR007087Zinc finger, C2H2
PROSITE patternPS00028093116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MSRKTDMLAF SLDFNLRSHM KTHSQENYHI CPYPECGKRY AHEYKLKNHI SSTHQKNTPD  60
APKYTPPVEK PVKTPKSTPA TYGSSSSERP YSCPYEGCDK SYIHEYKLNL HLRNMHPGHL  120
PDDNAKNAQS TADNEMDEGS DQDTYAARRG NGRIQKQSRP KPSLKQPPLK VARKGSSSAA  180
SQANLTISKK PWPLKEENYN EEDSEETEEE RERERDDVGE GWRYGENNDD DDEETEEDD*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0176940.0AB017694.1 Nicotiana tabacum WREBP-2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016564400.11e-146PREDICTED: uncharacterized zinc finger protein At4g06634
SwissprotQ2V3L35e-75Y4634_ARATH; Uncharacterized zinc finger protein At4g06634
TrEMBLM1AIE21e-120M1AIE2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000234591e-120(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73432332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.34e-65C2H2 family protein